Public Documents
2024
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Krithara, A., A. Nentidis, E. Vandorou, G. Katsimpras, Y. Almirantis, M. Arnal, A. Bunevicius, E. Farré-Maduell, M. Kassiss, V. Konstantakos, et al.,
"BioASQ Synergy: a dialogue between question-answering systems and biomedical experts for promoting COVID-19 research",
Journal of the American Medical Informatics Association, pp. ocae232, 08, 2024.
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Nentidis, A., G. Katsimpras, A. Krithara, S. Lima-López, E. Farré-Maduell, M. Krallinger, N. Loukachevitch, V. Davydova, E. Tutubalina, and G. Paliouras,
"Overview of BioASQ 2024: The Twelfth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering",
Experimental IR Meets Multilinguality, Multimodality, and Interaction, Cham, Springer Nature Switzerland, 2024.
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Nentidis, A., A. Krithara, G. Paliouras, M. Krallinger, L. Gasco Sanchez, S. Lima, E. Farre, N. Loukachevitch, V. Davydova, and E. Tutubalina,
"BioASQ at CLEF2024: The Twelfth Edition of the Large-Scale Biomedical Semantic Indexing and Question Answering Challenge",
Advances in Information Retrieval, Cham, Springer Nature Switzerland, 2024.
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Nentidis, A., G. Katsimpras, A. Krithara, and G. Paliouras,
"Overview of BioASQ Tasks 12b and Synergy12 in CLEF2024",
Working Notes of CLEF, 2024.
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Davydova, V., N. Loukachevitch, and E. Tutubalina,
"Overview of BioNNE Task on Biomedical Nested Named Entity Recognition at BioASQ 2024",
CLEF Working Notes, 2024.
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Lima-López, S., E. Farré-Maduell, J. Rodríguez-Miret, M. Rodríguez-Ortega, L. Lilli, J. Lenkowicz, G. Ceroni, J. Kossoff, A. Shah, A. Nentidis, et al.,
"Overview of MultiCardioNER task at BioASQ 2024 on Medical Specialty and Language Adaptation of Clinical NER Systems for Spanish, English and Italian",
Conference and Labs of the Evaluation Forum, 2024.
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2023
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Nentidis, A., G. Katsimpras, A. Krithara, S. Lima López, E. Farré-Maduell, L. Gasco, M. Krallinger, and G. Paliouras,
"Overview of BioASQ 2023: The Eleventh BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering",
Experimental IR Meets Multilinguality, Multimodality, and Interaction, Cham, Springer Nature Switzerland, 2023.
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Nentidis, A., A. Krithara, G. Paliouras, E. Farré-Maduell, S. Lima-López, and M. Krallinger,
"BioASQ at CLEF2023: The Eleventh Edition of the Large-Scale Biomedical Semantic Indexing and Question Answering Challenge",
Advances in Information Retrieval, Cham, Springer Nature Switzerland, 2023.
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Lima-López, S., E. Farré-Maduell, L. Gasco, A. Nentidis, A. Krithara, G. Katsimpras, G. Paliouras, and M. Krallinger,
"Overview of MedProcNER task on medical procedure detection and entity linking at BioASQ 2023",
Working Notes of CLEF, 2023.
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Krithara, A., J. G. Mork, A. Nentidis, and G. Paliouras,
"The road from manual to automatic semantic indexing of biomedical literature: a 10 years journey",
Frontiers in Research Metrics and Analytics, vol. 8, 2023.
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Nentidis, A., G. Katsimpras, A. Krithara, and G. Paliouras,
"Overview of BioASQ Tasks 11b and Synergy11 in CLEF2023",
Working Notes of CLEF, 2023.
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Krithara, A., A. Nentidis, K. Bougiatiotis, and G. Paliouras,
"BioASQ-QA: A manually curated corpus for Biomedical Question Answering",
Scientific Data, vol. 10, pp. 170, 2023.
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2022
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Nentidis, A., G. Katsimpras, E. Vandorou, A. Krithara, and G. Paliouras,
"Overview of BioASQ Tasks 10a, 10b and Synergy10 in CLEF2022",
Proceedings of the 10th BioASQ Workshop A challenge on large-scale biomedical semantic indexing and question answering, 2022.
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Nentidis, A., A. Krithara, G. Paliouras, L. Gasco, and M. Krallinger,
"BioASQ at CLEF2022: The Tenth Edition of the Large-scale Biomedical Semantic Indexing and Question Answering Challenge",
Advances in Information Retrieval: 44th European Conference on IR Research, ECIR 2022, Stavanger, Norway, April 10–14, 2022, Proceedings, Part II: Springer, 2022.
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Miranda-Escalada, A., L. Gasco, S. Lima-López, E. Farré-Maduell, D. Estrada, A. Nentidis, A. Krithara, G. Katsimpras, G. Paliouras, and M. Krallinger,
"Overview of DisTEMIST at BioASQ: Automatic detection and normalization of diseases from clinical texts: results, methods, evaluation and multilingual resources",
Working Notes of Conference and Labs of the Evaluation (CLEF) Forum. CEUR Workshop Proceedings, 2022.
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Nentidis, A., G. Katsimpras, E. Vandorou, A. Krithara, A. Miranda-Escalada, L. Gasco, M. Krallinger, and G. Paliouras,
"Overview of BioASQ 2022: The tenth BioASQ challenge on large-scale biomedical semantic indexing and question answering",
Experimental IR Meets Multilinguality, Multimodality, and Interaction: 13th International Conference of the CLEF Association, CLEF 2022, Bologna, Italy, September 5–8, 2022, Proceedings: Springer, 2022.
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2021
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Nentidis, A., G. Katsimpras, E. Vandorou, A. Krithara, L. Gasco, M. Krallinger, and G. Paliouras,
"Overview of BioASQ 2021: The Ninth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering",
International Conference of the Cross-Language Evaluation Forum for European Languages (CLEF2021) : Springer, 2021.
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Krithara, A., A. Nentidis, G. Paliouras, M. Krallinger, and A. Miranda,
"BioASQ at CLEF2021: Large-Scale Biomedical Semantic Indexing and Question Answering",
Advances in Information Retrieval, Cham, Springer International Publishing, 2021.
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Gasco, L., A. Nentidis, A. Krithara, D. Estrada-Zavala, R. Toshiyuki Murasaki, E. Primo-Peña, C. Bojo-Canales, G. Paliouras, and M. Krallinger,
"Overview of BioASQ 2021-MESINESP track. Evaluation of advance hierarchical classification techniques for scientific literature, patents and clinical trials.",
Proceedings of the 9th BioASQ Workshop A challenge on large-scale biomedical semantic indexing and question answering, 2021.
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Nentidis, A., G. Katsimpras, E. Vandorou, A. Krithara, and G. Paliouras,
"Overview of BioASQ Tasks 9a, 9b and Synergy in CLEF2021",
Proceedings of the 9th BioASQ Workshop A challenge on large-scale biomedical semantic indexing and question answering, 2021.
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2020
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Nentidis, A., A. Krithara, K. Bougiatiotis, M. Krallinger, C. Rodriguez-Penagos, M. Villegas, and G. Paliouras,
"Overview of BioASQ 2020: The Eighth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering",
International Conference of the Cross-Language Evaluation Forum for European Languages (CLEF2020) : Springer, 2020.
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Rodriguez-Penagos, C., A. Nentidis, A. Gonzalez-Agirre, A. Asensio, J. Armengol-Estapé, A. Krithara, M. Villegas, G. Paliouras, and M. Krallinger,
"Overview of MESINESP8, a Spanish Medical Semantic Indexing Task within BioASQ 2020",
Proceedings of the 8th BioASQ Workshop A challenge on large-scale biomedical semantic indexing and question answering, 2020.
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Nentidis, A., A. Krithara, K. Bougiatiotis, and G. Paliouras,
"Overview of BioASQ 8a and 8b: Results of the eighth edition of the BioASQ tasks a and b",
Proceedings of the 8th BioASQ Workshop A challenge on large-scale biomedical semantic indexing and question answering, 2020.
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Krallinger, M., A. Krithara, A. Nentidis, G. Paliouras, and M. Villegas,
"BioASQ at CLEF2020: large-scale biomedical semantic indexing and question answering",
European Conference on Information Retrieval: Springer, 2020.
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2018
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Kakadiaris, I., G. Paliouras, and A. Krithara,
"Proceedings of the 6th BioASQ Workshop A challenge on large-scale biomedical semantic indexing and question answering",
Proceedings of the 6th BioASQ Workshop A challenge on large-scale biomedical semantic indexing and question answering, 2018.
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Nentidis, A., A. Krithara, K. Bougiatiotis, G. Paliouras, and I. Kakadiaris,
"Results of the sixth edition of the BioASQ Challenge",
Proceedings of the 6th BioASQ Workshop A challenge on large-scale biomedical semantic indexing and question answering, 2018.
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2016
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Krithara, A., A. Nentidis, G. Paliouras, and I. Kakadiaris,
"Results of the 4th edition of BioASQ Challenge",
Proceedings of the Fourth BioASQ workshop, 2016.
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Kakadiaris, I., G. Paliouras, and A. Krithara,
"Proceedings of the Fourth BioASQ workshop",
Proceedings of the Fourth BioASQ workshop, 2016.
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2015
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Paliouras, G.,
"On the need for intelligent access to big data in life sciences",
Big Data in the H2020 Societal Challenge Health, demographic change and well-being, Brussels, Belgium, May, 2015.
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Hopfgartner, F., A. Hanbury, H. Mueller, N. Kando, S. Mercer, J. Kalpathy-Cramer, M. Potthast, M. Gollup, A. Krithara, J. Lin, et al.,
"Report on the Evaluation-as-a-Service (EaaS) expert workshop",
SIGIR Forum, vol. 49, pp. 57–65, June, 2015.
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Balikas, G., I. Partalas, N. Baskiotis, T. Artieres, E. Gaussier, P. Gallinari, I. Vetsikas, G. Paliouras, and A. Kosmopoulos,
"Evaluation infrastructure software for future oracle use",
BioASQ, Project deliverable D4.9, January, 2015.
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Balikas, G., A. Kosmopoulos, A. Krithara, G. Paliouras, and I. Kakadiaris,
"Results of the BioASQ tasks of the Question Answering Lab at CLEF 2015",
CLEF 2015, 2015.
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Balikas, G., A. Krithara, I. Partalas, and G. Paliouras,
"BioASQ: A challenge on large-scale biomedical semantic indexing and question answering",
International Workshop on Multimodal Retrieval in the Medical Domain: Springer, 2015.
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Tsatsaronis, G., G. Balikas, P. Malakasiotis, I. Partalas, M. Zschunke, M. R. Alvers, D. Weissenborn, A. Krithara, S. Petridis, D. Polychronopoulos, et al.,
"An overview of the BIOASQ large-scale biomedical semantic indexing and question answering competition",
BMC Bioinformatics, vol. 16, pp. 138, 2015.
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2014
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Partalas, I., G. Balikas, A-C. Ngonga Ngomo, M. Malakasiotis, A. Krithara, E. Gaussier, and G. Paliouras,
"Technology Overview Report 2",
BioASQ, Project deliverable D5.3, September, 2014.
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Balikas, G., I. Partalas, N. Baskiotis, T. Artieres, E. Gaussier, P. Gallinari, and I. Vetsikas,
"Report on challenge operation and technical support 2",
BioASQ, Project deliverable D4.8, September, 2014.
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Ngomo, A-C. Ngonga, A. Krithara, and A. Kosmopoulos,
"Journal Special Issue",
BioASQ, Project deliverable D2.10, October, 2014.
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Ngomo, A-C. Ngonga, A. Krithara, G. Paliouras, M. Alvers, C. Armeniakou, and K. Stamatakis,
"Press Releases 2nd version",
BioASQ, Project deliverable D2.12, October, 2014.
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Heino, N., A-C. Ngonga Ngomo, G. Paliouras, A. Krithara, and A. Kosmopoulos,
"Project Showcase",
BioASQ, Project deliverable D2.9, October, 2014.
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Alvers, M., G. Tsatsaronis, M. Zschunke, A-C. Ngonga Ngomo, A. Kosmopoulos, and C. Armeniakou,
"Exploitation and Dissemination Plan",
BioASQ, Project deliverable D2.11, October, 2014.
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Malakasiotis, P., I. Androutsopoulos, A. Bernadou, N. Chatzidiakou, E. Papaki, P. Constantopoulos, I. Pavlopoulos, A. Krithara, Y. Almyrantis, D. Polychronopoulos, et al.,
"Challenge Evaluation Report 2 and Roadmap",
BioASQ, Project deliverable D5.4, October, 2014.
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Ngomo, A-C. Ngonga,
"Workshop 2",
BioASQ, Project deliverable D2.8, October, 2014.
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Paliouras, G., and A. Krithara,
"Final Report",
BioASQ, Project deliverable D1.6, November, 2014.
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Balikas, G., I. Partalas, N. Baskiotis, T. Artieres, E. Gausier, and P. Gallinari,
"Evaluation infrastructure software for the challenges 2nd version",
BioASQ, Project deliverable D4.7, March, 2014.
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Partalas, I., G. Balikas, N. Baskiotis, D. Polychronopoulos, Y. Almirantis, E. Gaussier, T. Artieres, and P. Gallinari,
"Pre-processed benchmark set 2",
BioASQ, Project deliverable D3.8 and D4.6, March, 2014.
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Paliouras, G.,
"BioASQ, a challenge on large-scale biomedical semantic indexing and question answering",
BioTxtM 2014, 05/2014.
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Androutsopoulos, I.,
BioASQ, a challenge on large-scale biomedical semantic indexing and question answering,
, Digital Curation Unit, Institute for the Management of Information Systems, Research Centre "Athena", 02/2014.
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Artières, P. Gallinari,
"BioASQ - A challenge on large-scale biomedical semantic indexing and question answering",
Web-Scale Classification Workshop (WSDM), 2014.
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Androutsopoulos, I.,
Human Language Technology for Cultural Heritage and Digital Humanities,
, kick-off meeting του DARIAH-GR, 2014.
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2013
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Heino, N., and A-C. Ngonga Ngomo,
"Social Network",
BioASQ, Project deliverable D2.6, September, 2013.
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Ngomo, A-C. Ngonga,
"1st Workshop",
BioASQ, Project deliverable D2.5, September, 2013.
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Balikas, G., I. Partalas, N. Baskiotis, T. Artieres, E. Gaussier, and P. Gallinari,
"Report On Challenge operation and technical support 1",
BioASQ, Project deliverable D4.4, October, 2013.
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Partalas, I., and E. Gaussier,
"Technology Overview Report 1",
BioASQ, Project deliverable D5.1, October, 2013.
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Alvers, M., G. Tsatsaronis, M. Zschunke, and A-C. Ngonga Ngomo,
"Exploitation and dissemination strategy",
BioASQ, Project deliverable D2.3, May, 2013.
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Partalas, I., G. Balikas, N. Baskiotis, D. Polychronopoulos, Y. Almirantis, E. Gaussier, T. Artieres, and P. Gallinari,
"Pre-processed benchmark set 1",
BioASQ, Project deliverable D3.5 and D4.2, June, 2013.
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Balikas, G., I. Partalas, N. Baskiotis, T. Artieres, E. Gaussier, and P. Gallinari,
"Evaluation Infrastructure ",
BioASQ, Project deliverable D4.3, June, 2013.
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Polychronopoulos, D., Y. Almirantis, A. Krithara, and G. Paliouras,
"Expert Team",
BioASQ, Project deliverable D3.1, January, 2013.
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Stamatakis, K., and G. Paliouras,
"Project Leaflets 2nd version",
BioASQ, 2014 D2.7, February, 2013.
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Heino, N.,
"Annotation Tool - 2nd Version",
BioASQ, Project deliverable D3.6, December, 2013.
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Malakasiotis, P., I. Androutsopoulos, Y. Almirantis, D. Polychronopoulos, and I. Pavlopoulos,
"Tutorials and Guidelines 2",
BioASQ, Project deliverable D3.7, December, 2013.
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Balikas, G., I. Partalas, N. Baskiotis, P. Malakasiotis, I. Pavlopoulos, I. Androutsopoulos, T. Artieres, E. Gaussier, and P. Gallinari,
"Evaluation Framework Specifications - 2nd Version",
BioASQ, Project deliverable D4.5, December, 2013.
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Malakasiotis, P., I. Androutsopoulos, and I. Pavlopoulos,
"Challenge Evaluation Report ",
BioASQ, Project deliverable D5.2, December, 2013.
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Androutsopoulos, I.,
"A challenge on large-scale biomedical semantic indexing and question answering",
BioNLP workshop (part of the ACL Conference), 08/2013.
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Tsatsaronis, G., and M. Schroeder,
"A Challenge On Large-Scale Biomedical Semantic Indexing And Question Answering",
ISMB/ECCB 2013 (BioLINK SIG), 07/2013.
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Stamatakis, K., and G. Paliouras,
"Project Leaflets",
BioASQ, Project deliverable D2.4, 05/2013.
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Ngomo, A-C. Ngonga, G. Paliouras, A. Krithara, and S. Petridis,
"Press Release 1",
BioASQ, Project deliverable D2.2, 05/2013.
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Balikas, G., I. Partalas, A. Kosmopoulos, S. Petridis, P. Malakasiotis, I. Pavlopoulos, I. Androutsopoulos, N. Baskiotis, E. Gaussier, T. Artieres, et al.,
"Evaluation Framework Specifications",
BioASQ, Project deliverable D4.1, 05/2013.
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Ngomo, A-C. Ngonga, N. Heino, R. Speck, T. Ermilov, and G. Tsatsaronis,
"Annotation Tool",
BioASQ, Project deliverable D3.3, 02/2013.
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Krithara, A., G. Paliouras, and C. Armeniakou,
"Quality Assurance Plan",
BioASQ, Project deliverable D1.2, 01/2013.
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Tsatsaronis, G., M. Zschunke, M. R. Alvers, and C. Plonka,
"Report on existing and selected datasets",
BioASQ, Project deliverable D3.2, 01/2013.
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Malakasiotis, P., I. Androutsopoulos, Y. Almirantis, D. Polychronopoulos, and I. Pavlopoulos,
"Tutorials and Guidelines",
BioASQ, Project deliverable D3.4, 01/2013.
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Petridis, S., A. Kosmopoulos, and K. Stamatakis,
"Project Wiki",
BioASQ, project deliverable D1.1, 01/2013.
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Ngomo, A-C. Ngonga, L. Bühmann, C. Unger, J. Lehmann, and D. Gerber,
"Sorry, i don't speak SPARQL: translating SPARQL queries into natural language",
Proceedings of the 22nd international conference on World Wide Web, Republic and Canton of Geneva, Switzerland, International World Wide Web Conferences Steering Committee, 2013.
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Kosmopoulos, A., I. Partalas, E. Gaussier, G. Paliouras, and I. Androutsopoulos,
"Evaluation Measures for Hierarchical Classification: a unified view and novel approaches",
CoRR, vol. abs/1306.6802, 2013.
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2012
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Paliouras, G.,
BioASQ: A challenge on large-scale biomedical semantic indexing and question answering,
, 11/2012.
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Tsatsaronis, G., M. Schroeder, G. Paliouras, Y. Almirantis, I. Androutsopoulos, E. Gaussier, P. Gallinari, T. Artieres, M. R. Alvers, M. Zschunke, et al.,
"BioASQ: A Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering",
2012 AAAI Fall Symposium Series, 2012.
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